How reconcileIssues work for "parent in (...)" jql query

So the scenario you’re asking “delete” about may mean two things, I don’t know exactly which one so let me tackle them separately.

  1. Issue is deleted from Jira completely.
    That’s correct, deleted issues are not supported today by reconcile flow, this was brought to our attention recently and it’s tracked by https://jira.atlassian.com/browse/JRACLOUD-93328. There’s no workaround at the present.

  2. Issue gets re-parented therefore “deleted” from previous parent.
    Example, Parent for Issue A as B and now it’s B. In this situation Issue A gets modified their ID should be passed to reconcile flow.