So the scenario you’re asking “delete” about may mean two things, I don’t know exactly which one so let me tackle them separately.
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Issue is deleted from Jira completely.
That’s correct, deleted issues are not supported today by reconcile flow, this was brought to our attention recently and it’s tracked by https://jira.atlassian.com/browse/JRACLOUD-93328. There’s no workaround at the present. -
Issue gets re-parented therefore “deleted” from previous parent.
Example, Parent for Issue A as B and now it’s B. In this situation Issue A gets modified their ID should be passed to reconcile flow.