Switching between projects require maven clean

I have two separate plugin projects. As far as I understand, when you do atlas-run, a Jira server is setup in the project’s target/jira folder.

Then I stop the server, switch to another project and start server again. The second project will now get class not found exceptions (e.g. for a workflow post function added in the second project) until I do a maven clean and restart the server. Same if I switch back to the first project.

If the Jira server is setup in each project’s target/jira folder, they should have no effect on each other.

Doing a maven clean is an extreme hassle. I lose all my settings.

Are there anything shared in the SDK causing that? What can I do to make switching between projects work?