No, the opposite: remove the <context>atl.general</context> from both of your web-resources.
When you add a context to a web-resource, you’re saying “please implicitly load these resources on every set of pages that use this context”. The atl.general context is loaded on practically every page in JIRA. The net effect: both your resources are being loaded on every single page in JIRA – this is why you’re seeing the extraneous resource.
Because you’re explicitly loading your web-resources on your pages, you don’t want a context. So, just remove that and things will work as expected.